GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for thuF (maltose ABC transporter, permease component 1 (ThuF)) in D-maltose catabolism

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Definition of thuF

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 291-334 amino acids (4/5 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.25 / Q72H67 Maltose transport system permease protein malF aka TT_C1628, component of The trehalose/maltose/sucrose/palatinose porter (TTC1627-9) plus MalK1 (ABC protein, shared with 3.A.1.1.24) (Silva et al. 2005; Chevance et al., 2006). The receptor (TTC1627) binds disaccharide alpha-glycosides, namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: BPD_transp_1
Heteromeric, 291 amino acids: PaperBLAST, CDD, Compare to cluster

MALF_THELN / O51924 Trehalose/maltose transport system permease protein MalF from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)
PFams: BPD_transp_1
295 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.7 / O51924 MalF, component of Maltose/trehalose porter from Thermococcus litoralis
PFams: BPD_transp_1
Heteromeric, 300 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.44 / Q9KZ07 Putative maltose permease, component of MalEFG (K unknown), involved in maltose and maltodextrin uptake from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
PFams: BPD_transp_1
Heteromeric, 334 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b20326 ABC transporter for D-Trehalose, permease component 1 from Sinorhizobium meliloti 1021
TC 3.A.1.1.17 / Q9R9Q6 ThuF aka RB0312 aka SMB20326, component of Trehalose/maltose/sucrose porter (trehalose inducible) from Rhizobium meliloti (Sinorhizobium meliloti)
PFams: BPD_transp_1
Heteromeric, 328 amino acids: PaperBLAST, CDD, Compare to cluster