GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for mtlE (polyol ABC transporter, substrate-binding component MtlE/SmoE) in D-mannitol catabolism

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Definition of mtlE

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 436-440 amino acids (4/5 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.49 / O30491 MtlE, component of The polyol (mannitol, glucitol (sorbitol), arabitol (arabinitol; lyxitol)) uptake porter, MtlEFGK from Pseudomonas fluorescens
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 436 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.5 / O30831 SmoE, component of Hexitol (glucitol; mannitol) porter from Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 436 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_12715 ABC transporter for D-Mannitol, D-Mannose, and D-Sorbitol, periplasmic substrate-binding protein from Pseudomonas simiae WCS417
PFams: SBP_bac_1, SBP_bac_8
440 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_3042 ABC transporter for D-Mannitol, D-Mannose, and D-Mannose, periplasmic substrate-binding component from Pseudomonas fluorescens GW456-L13
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 436 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_25880 ABC transporter for D-mannitol and D-mannose, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E3
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 436 amino acids: PaperBLAST, CDD, Compare to cluster