Other Characterized Proteins Similar to mtlF

Finding the characterized proteins for mtlF (polyol ABC transporter, permease component 1 (MtlF/SmoF)) in D-mannitol catabolism

Or see clustering for step mtlF

Or see all steps for D-mannitol catabolism

Or cluster curated proteins matching a keyword

Definition of mtlF

• Curated sequence O30492: MtlF, component of The polyol (mannitol, glucitol (sorbitol), arabitol (arabinitol; lyxitol)) uptake porter, MtlEFGK
• Curated sequence GFF2492: ABC transporter for D-Mannitol, D-Mannose, and D-Sorbitol, permease component 2
• Curated sequence PfGW456L13_3041: ABC transporter for D-Mannitol, D-Mannose, and D-Mannose, permease component 2
• Curated sequence AO353_25885: ABC transporter for D-mannitol and D-mannose, permease component 1
• Ignore hits to AO356_00020 when looking for 'other' hits (ABC transporter for D-Sorbitol, permease component 2)
• Ignore hits to Pf6N2E2_1962 when looking for 'other' hits (ABC transporter for D-sorbitol, permease component 1)
• Curated sequence O30832: SmoF, component of Hexitol (glucitol; mannitol) porter

Fetched 5 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 5 other characterized sequences. (Found 10 hits including self hits.)

Removing ignored items reduces this to 3 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for mtlF.)

PGA1_c13200 ABC transporter for D-Sorbitol, permease component 2 from Phaeobacter inhibens BS107
PFams: BPD_transp_1
Heteromeric, 288 amino acids: PaperBLAST, CDD, reanno::Phaeo:GFF1304
66% identical to

TC 3.A.1.1.5 / O30832 SmoF, component of Hexitol (glucitol; mannitol) porter from Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
PFams: BPD_transp_1
Heteromeric, 290 amino acids: PaperBLAST, CDD

Ac3H11_2943 ABC transporter for D-Sorbitol, permease component 2 from Acidovorax sp. GW101-3H11
PFams: BPD_transp_1
Heteromeric, 316 amino acids: PaperBLAST, CDD, reanno::acidovorax_3H11:Ac3H11_2943
62% identical to

TC 3.A.1.1.49 / O30492 MtlF, component of The polyol (mannitol, glucitol (sorbitol), arabitol (arabinitol; lyxitol)) uptake porter, MtlEFGK from Pseudomonas fluorescens
PFams: BPD_transp_1
Heteromeric, 296 amino acids: PaperBLAST, CDD

BPHYT_RS16110 ABC transporter for D-Sorbitol, permease component 2 from Burkholderia phytofirmans PsJN
PFams: BPD_transp_1
Heteromeric, 311 amino acids: PaperBLAST, CDD, reanno::BFirm:BPHYT_RS16110
60% identical to

PfGW456L13_3041 ABC transporter for D-Mannitol, D-Mannose, and D-Mannose, permease component 2 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 299 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for mtlF.)

AO356_00020 ABC transporter for D-Sorbitol, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 308 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_00020
91% identical to

TC 3.A.1.1.49 / O30492 MtlF, component of The polyol (mannitol, glucitol (sorbitol), arabitol (arabinitol; lyxitol)) uptake porter, MtlEFGK from Pseudomonas fluorescens
PFams: BPD_transp_1
Heteromeric, 296 amino acids: PaperBLAST, CDD

Pf6N2E2_1962 ABC transporter for D-sorbitol, permease component 1 from Pseudomonas fluorescens FW300-N2E2
PFams: BPD_transp_1
Heteromeric, 280 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_1962
92% identical to

TC 3.A.1.1.49 / O30492 MtlF, component of The polyol (mannitol, glucitol (sorbitol), arabitol (arabinitol; lyxitol)) uptake porter, MtlEFGK from Pseudomonas fluorescens
PFams: BPD_transp_1
Heteromeric, 296 amino acids: PaperBLAST, CDD