GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for PS417_11890 (myo-inositol ABC transporter, ATPase component) in myo-inositol catabolism

Or see other characterized proteins similar to PS417_11890

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Or cluster curated proteins matching a keyword

Definition of PS417_11890

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 517-521 amino acids (1/2 heteromeric)

The first sequence in each cluster is the seed.

PS417_11890 Inositol transport system ATP-binding protein from Pseudomonas simiae WCS417
PFams: ABC_tran, ABC_tran
517 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_21385 m-Inositol ABC transporter, ATPase component (itaA) from Pseudomonas fluorescens FW300-N2E3
PFams: ABC_tran, ABC_tran
Heteromeric, 521 amino acids: PaperBLAST, CDD, Compare to cluster