GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for iolB (5-deoxy-D-glucuronate isomerase) in myo-inositol catabolism

Or see other characterized proteins similar to iolB

Or see all steps for myo-inositol catabolism

Or cluster curated proteins matching a keyword

Definition of iolB

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by cluster

Bacillus subtilis

IOLB_BACSU / P42413 5-deoxy-glucuronate isomerase; 5DG isomerase; EC 5.3.1.30 from Bacillus subtilis (strain 168)
P42413 5-deoxy-glucuronate isomerase (EC 5.3.1.30) from Bacillus subtilis
P42413 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Bacillus subtilis (strain 168)
PFams: KduI
271 amino acids: PaperBLAST, CDD (Cluster 1)

Burkholderia phytofirmans

BPHYT_RS13925 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Burkholderia phytofirmans PsJN
PFams: KduI
266 amino acids: PaperBLAST, CDD (Cluster 1)

Klebsiella michiganensis

BWI76_RS03075 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Klebsiella michiganensis M5al
PFams: KduI
269 amino acids: PaperBLAST, CDD (Cluster 1)

Phaeobacter inhibens

PGA1_c07230 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Phaeobacter inhibens BS107
PFams: KduI
285 amino acids: PaperBLAST, CDD (Singleton 1)

Pseudomonas fluorescens

AO353_21345 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Pseudomonas fluorescens FW300-N2E3
PFams: KduI
269 amino acids: PaperBLAST, CDD (Cluster 1)

AO356_23170 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Pseudomonas fluorescens FW300-N2C3
PFams: KduI
269 amino acids: PaperBLAST, CDD (Cluster 1)

Pf6N2E2_514 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Pseudomonas fluorescens FW300-N2E2
PFams: KduI
269 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas simiae

PS417_11860 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Pseudomonas simiae WCS417
PFams: KduI
262 amino acids: PaperBLAST, CDD (Cluster 1)

Sinorhizobium meliloti

SMc00432 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Sinorhizobium meliloti 1021
PFams: KduI
266 amino acids: PaperBLAST, CDD (Cluster 1)