GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for iolC (5-dehydro-2-deoxy-D-gluconate kinase) in myo-inositol catabolism

Or see other characterized proteins similar to iolC

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Definition of iolC

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 637-681 amino acids (not heteromeric)

BPHYT_RS13910 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Burkholderia phytofirmans PsJN
PFams: PfkB, DUF2090
681 amino acids: PaperBLAST, CDD, Compare to cluster

CCNA_01356 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Caulobacter crescentus NA1000
PFams: PfkB, DUF2090
642 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS12125 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Herbaspirillum seropedicae SmR1
PFams: PfkB, DUF2090
657 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS03085 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Klebsiella michiganensis M5al
PFams: PfkB, DUF2090
637 amino acids: PaperBLAST, CDD, Compare to cluster

SMc01165 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Sinorhizobium meliloti 1021
PFams: PfkB, DUF2090
650 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_11850 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas simiae WCS417
PFams: PfkB, DUF2090
645 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_21335 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens FW300-N2E3
PFams: PfkB, DUF2090
645 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_23160 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens FW300-N2C3
PFams: PfkB, DUF2090
645 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_512 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens FW300-N2E2
PFams: PfkB, DUF2090
645 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 325-330 amino acids (not heteromeric)

IOLC_BACSU / P42414 5-dehydro-2-deoxygluconokinase; 2-deoxy-5-keto-D-gluconate kinase; DKG kinase; EC 2.7.1.92 from Bacillus subtilis (strain 168)
P42414 5-dehydro-2-deoxy-D-gluconate kinase (EC 2.7.1.92) from Bacillus subtilis (strain 168)
PFams: PfkB
325 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c07240 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) from Phaeobacter inhibens BS107
PFams: PfkB
330 amino acids: PaperBLAST, CDD, Compare to cluster