GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for iolE (scyllo-inosose 2-dehydratase) in myo-inositol catabolism

Or see other characterized proteins similar to iolE

Or see all steps for myo-inositol catabolism

Or cluster curated proteins matching a keyword

Definition of iolE

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by cluster

Bacillus subtilis

IOLE_BACSU / P42416 Inosose dehydratase; 2-keto-myo-inositol dehydratase; 2KMI dehydratase; EC 4.2.1.44 from Bacillus subtilis (strain 168)
P42416 scyllo-inosose dehydratase (EC 4.2.1.44) from Bacillus subtilis (strain 168)
PFams: AP_endonuc_2
297 amino acids: PaperBLAST, CDD (Cluster 1)

Burkholderia phytofirmans

BPHYT_RS13920 Myo-inosose-2 dehydratase (EC 4.2.1.44) from Burkholderia phytofirmans PsJN
PFams: AP_endonuc_2
305 amino acids: PaperBLAST, CDD (Cluster 1)

Herbaspirillum seropedicae

HSERO_RS12135 Myo-inosose-2 dehydratase (EC 4.2.1.44) from Herbaspirillum seropedicae SmR1
PFams: AP_endonuc_2
306 amino acids: PaperBLAST, CDD (Cluster 1)

Phaeobacter inhibens

PGA1_c07270 Myo-inosose-2 dehydratase (EC 4.2.1.44) from Phaeobacter inhibens BS107
PFams: AP_endonuc_2
297 amino acids: PaperBLAST, CDD (Singleton 1)

Pseudomonas fluorescens

AO353_21340 Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens FW300-N2E3
PFams: AP_endonuc_2
297 amino acids: PaperBLAST, CDD (Cluster 1)

AO356_23165 Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens FW300-N2C3
PFams: AP_endonuc_2
297 amino acids: PaperBLAST, CDD (Cluster 1)

Pf6N2E2_513 Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens FW300-N2E2
PFams: AP_endonuc_2
297 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas simiae

PS417_11855 Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas simiae WCS417
PFams: AP_endonuc_2
295 amino acids: PaperBLAST, CDD (Cluster 1)

Sinorhizobium meliloti

SMc00433 Myo-inosose-2 dehydratase (EC 4.2.1.44) from Sinorhizobium meliloti 1021
PFams: AP_endonuc_2
300 amino acids: PaperBLAST, CDD (Cluster 1)