GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for paaC (phenylacetyl-CoA 1,2-epoxidase, subunit C) in phenylacetate catabolism

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Definition of paaC

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 248-253 amino acids (heteromeric)

The first sequence in each cluster is the seed.

b1390 phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) from Escherichia coli K-12 substr. MG1655
PAAC_ECOLI / P76079 1,2-phenylacetyl-CoA epoxidase, subunit C; 1,2-phenylacetyl-CoA epoxidase, structural subunit beta; 1,2-phenylacetyl-CoA monooxygenase, subunit C from Escherichia coli (strain K12)
P76079 phenylacetyl-CoA 1,2-epoxidase (EC 1.14.13.149) from Escherichia coli
P76079 phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) from Escherichia coli (strain K12)
PFams: PaaA_PaaC
Heteromeric, 248 amino acids: PaperBLAST, CDD, Compare to cluster

Q845J4 ring 1,2-phenylacetyl-CoA epoxidase PaaC subunit (EC 1.14.13.149) from Pseudomonas sp. Y2
PFams: PaaA_PaaC
Heteromeric, 253 amino acids: PaperBLAST, CDD, Compare to cluster