GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to pimF

Finding the characterized proteins for pimF (6-carboxyhex-2-enoyl-CoA hydratase) in phenylacetate catabolism

Or see clustering for step pimF

Or see all steps for phenylacetate catabolism

Or cluster curated proteins matching a keyword

Definition of pimF

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 3 other characterized sequences. (Found 4 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for pimF.)

BPHYT_RS13545 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) from Burkholderia phytofirmans PsJN
PFams: ECH_1, ECH_2, 3HCDH_N, 3HCDH
706 amino acids: PaperBLAST, CDD, reanno::BFirm:BPHYT_RS13545
49% identical to

Q6N3H7 6-carboxyhex-2-enoyl-CoA hydratase from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
PFams: ECH_1, ECH_2, 3HCDH_N, 3HCDH, 3HCDH
699 amino acids: PaperBLAST, CDD

Q08426 peroxisomal bifunctional enzyme (EC 4.2.1.17; EC 1.1.1.35) from Homo sapiens
ECHP_HUMAN / Q08426 Peroxisomal bifunctional enzyme; PBE; PBFE; EC 4.2.1.17; EC 5.3.3.8; EC 1.1.1.35 from Homo sapiens (Human)
PFams: ECH_1, ECH_2, 3HCDH_N, 3HCDH, 3HCDH
723 amino acids: PaperBLAST, CDD, SwissProt::Q08426
43% identical to

Q6N3H7 6-carboxyhex-2-enoyl-CoA hydratase from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
PFams: ECH_1, ECH_2, 3HCDH_N, 3HCDH, 3HCDH
699 amino acids: PaperBLAST, CDD

ECHP_RAT / P07896 Peroxisomal bifunctional enzyme; PBE; PBFE; EC 4.2.1.17; EC 5.3.3.8; EC 1.1.1.35 from Rattus norvegicus (Rat)
P07896 enoyl-CoA hydratase (EC 4.2.1.17) from Rattus norvegicus
RF|NP_598290.1 noyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase; EC 1.1.1.35; EC 4.2.1.17; EC 5.3.3.8 from Rattus norvegicus
PFams: ECH_1, ECH_2, 3HCDH_N, 3HCDH, 3HCDH
722 amino acids: PaperBLAST, CDD, BRENDA::P07896
43% identical to

Q6N3H7 6-carboxyhex-2-enoyl-CoA hydratase from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
PFams: ECH_1, ECH_2, 3HCDH_N, 3HCDH, 3HCDH
699 amino acids: PaperBLAST, CDD