GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to QDPR

Finding the characterized proteins for QDPR (6,7-dihydropteridine reductase) in L-phenylalanine catabolism

Or see clustering for step QDPR

Or see all steps for L-phenylalanine catabolism

Or cluster curated proteins matching a keyword

Definition of QDPR

Fetched 7 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 5 other characterized sequences. (Found 12 hits including self hits.)

Removing ignored items reduces this to 2 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for QDPR.)

HMP_CUPNH / P39662 Flavohemoprotein; FHP; Flavohemoglobin; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD; EC 1.14.12.17 from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)
RF|NP_942838.1 nitric oxide dioxygenase; EC 1.14.12.17 from Ralstonia eutropha H16
PFams: Globin, FAD_binding_6, NAD_binding_1
403 amino acids: PaperBLAST, CDD, SwissProt::P39662
44% identical to

b2552 nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli K-12 substr. MG1655
P24232 nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli (strain K12)
HMP_ECOLI / P24232 Flavohemoprotein; Flavohemoglobin; HMP; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD; EC 1.14.12.17 from Escherichia coli (strain K12)
GB|AAC75605.1 flavohemoprotein; EC 1.14.12.17 from Escherichia coli K12
PFams: Globin, FAD_binding_6, NAD_binding_1
396 amino acids: PaperBLAST, CDD

HMP_BACSU / P49852 Flavohemoprotein; Flavohemoglobin; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD; EC 1.14.12.17 from Bacillus subtilis (strain 168)
GB|BAA11258.1 flavohemoprotein; EC 1.14.12.17 from Bacillus subtilis
PFams: Globin, FAD_binding_6, NAD_binding_1
399 amino acids: PaperBLAST, CDD, CharProtDB::CH_004624
40% identical to

b2552 nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli K-12 substr. MG1655
P24232 nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli (strain K12)
HMP_ECOLI / P24232 Flavohemoprotein; Flavohemoglobin; HMP; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD; EC 1.14.12.17 from Escherichia coli (strain K12)
GB|AAC75605.1 flavohemoprotein; EC 1.14.12.17 from Escherichia coli K12
PFams: Globin, FAD_binding_6, NAD_binding_1
396 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for QDPR.)

HMP_SALTY / P26353 Flavohemoprotein; Flavohemoglobin; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD; EC 1.14.12.17 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: Globin, FAD_binding_6, NAD_binding_1
396 amino acids: PaperBLAST, CDD, SwissProt::P26353
90% identical to

b2552 nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli K-12 substr. MG1655
P24232 nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli (strain K12)
HMP_ECOLI / P24232 Flavohemoprotein; Flavohemoglobin; HMP; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD; EC 1.14.12.17 from Escherichia coli (strain K12)
GB|AAC75605.1 flavohemoprotein; EC 1.14.12.17 from Escherichia coli K12
PFams: Globin, FAD_binding_6, NAD_binding_1
396 amino acids: PaperBLAST, CDD

P15888 nitrobenzene nitroreductase (EC 1.7.1.16) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Nitroreductase
217 amino acids: PaperBLAST, CDD, BRENDA::P15888
88% identical to

b0578 NAD(P)H nitroreductase NfsB (EC 1.5.1.34) from Escherichia coli K-12 substr. MG1655
P38489 NAD(P)H nitroreductase NfsB (EC 1.5.1.34) from Escherichia coli (strain K12)
NFSB_ECOLI / P38489 Oxygen-insensitive NAD(P)H nitroreductase; Dihydropteridine reductase; FMN-dependent nitroreductase; EC 1.-.-.-; EC 1.5.1.34 from Escherichia coli (strain K12)
PDB|1OO5_A oxygen-insensitive NAD(P)H nitroreductase; EC 1.-.-.-; EC 1.5.1.34 from Escherichia coli K12
PFams: Nitroreductase
217 amino acids: PaperBLAST, CDD

NFSB_ENTCL / Q01234 Oxygen-insensitive NAD(P)H nitroreductase; NR; EC 1.-.-.- from Enterobacter cloacae
Q01234 nitrobenzene nitroreductase (EC 1.7.1.16) from Enterobacter cloacae
PFams: Nitroreductase
217 amino acids: PaperBLAST, CDD, SwissProt::Q01234
88% identical to

b0578 NAD(P)H nitroreductase NfsB (EC 1.5.1.34) from Escherichia coli K-12 substr. MG1655
P38489 NAD(P)H nitroreductase NfsB (EC 1.5.1.34) from Escherichia coli (strain K12)
NFSB_ECOLI / P38489 Oxygen-insensitive NAD(P)H nitroreductase; Dihydropteridine reductase; FMN-dependent nitroreductase; EC 1.-.-.-; EC 1.5.1.34 from Escherichia coli (strain K12)
PDB|1OO5_A oxygen-insensitive NAD(P)H nitroreductase; EC 1.-.-.-; EC 1.5.1.34 from Escherichia coli K12
PFams: Nitroreductase
217 amino acids: PaperBLAST, CDD