GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for atoD (acetoacetyl-CoA transferase, B subunit) in L-phenylalanine catabolism

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Definition of atoD

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 207-221 amino acids (3/4 heteromeric)

The first sequence in each cluster is the seed.

b2222 acetyl-CoA:acetoacetyl-CoA transferase subunit β from Escherichia coli K-12 substr. MG1655
P76459 acetyl-CoA:acetoacetyl-CoA transferase subunit β from Escherichia coli (strain K12)
PFams: CoA_trans
216 amino acids: PaperBLAST, CDD, Compare to cluster

P56007 succinyl-CoA:acetoacetate CoA-transferase subunit B (EC 2.8.3.5) from Helicobacter pylori (strain ATCC 700392 / 26695)
PFams: CoA_trans
Heteromeric, 207 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_2112 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B from Pseudomonas fluorescens FW300-N2E2
PFams: CoA_trans, AcetylCoA_hyd_C
Heteromeric, 221 amino acids: PaperBLAST, CDD, Compare to cluster