GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gcdH (glutaryl-CoA dehydrogenase) in L-phenylalanine catabolism

Or see other characterized proteins similar to gcdH

Or see all steps for L-phenylalanine catabolism

Or search by keyword

Definition of gcdH

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 393-438 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B0EVL5 glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
395 amino acids: PaperBLAST, CDD, Compare to cluster

Q3JP94 glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
395 amino acids: PaperBLAST, CDD, Compare to cluster

GCDH_MOUSE / Q60759 Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Mus musculus (Mouse)
Q60759 glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Mus musculus
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
438 amino acids: PaperBLAST, CDD, Compare to cluster

GCDH_HUMAN / Q92947 Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Homo sapiens (Human)
Q92947 glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Homo sapiens
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
438 amino acids: PaperBLAST, CDD, Compare to cluster

GCDH_PIG / P81140 Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa (Pig)
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
408 amino acids: PaperBLAST, CDD, Compare to cluster

Q88RH2 glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
393 amino acids: PaperBLAST, CDD, Compare to cluster