GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for iorA (phenylpyruvate:ferredoxin oxidoreductase, IorA subunit) in L-phenylalanine catabolism

Or see other characterized proteins similar to iorA

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Definition of iorA

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 578-647 amino acids (heteromeric)

The first sequence in each cluster is the seed.

O07835 indolepyruvate ferredoxin oxidoreductase (subunit 2/2) (EC 1.2.7.8) from Thermococcus kodakarensis
PFams: POR_N, TPP_enzyme_C, Fer4_7, Fer4_9, Fer4
Heteromeric, 647 amino acids: PaperBLAST, CDD, Compare to cluster

Q6LZB6 indolepyruvate ferredoxin oxidoreductase (subunit 2/2) (EC 1.2.7.8) from Methanococcus maripaludis
PFams: POR_N, TPP_enzyme_C, Fer4
Heteromeric, 578 amino acids: PaperBLAST, CDD, Compare to cluster

Q6M0F5 indolepyruvate ferredoxin oxidoreductase (subunit 2/2) (EC 1.2.7.8) from Methanococcus maripaludis
PFams: POR_N, TPP_enzyme_C, Fer4_10, Fer4
Heteromeric, 612 amino acids: PaperBLAST, CDD, Compare to cluster

IORA_METTM / P80910 Indolepyruvate oxidoreductase subunit IorA; IOR; Indolepyruvate ferredoxin oxidoreductase subunit alpha; EC 1.2.7.8 from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum)
PFams: POR_N, TPP_enzyme_C
Heteromeric, 618 amino acids: PaperBLAST, CDD, Compare to cluster