GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for iorB (phenylpyruvate:ferredoxin oxidoreductase, IorB subunit) in L-phenylalanine catabolism

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Definition of iorB

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 188-202 amino acids (heteromeric)

The first sequence in each cluster is the seed.

O07836 indolepyruvate ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.8) from Thermococcus kodakarensis
PFams: POR
Heteromeric, 202 amino acids: PaperBLAST, CDD, Compare to cluster

Q6LZB5 indolepyruvate ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.8) from Methanococcus maripaludis
PFams: POR
Heteromeric, 188 amino acids: PaperBLAST, CDD, Compare to cluster

Q6M0F6 indolepyruvate ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.8) from Methanococcus maripaludis
PFams: POR
Heteromeric, 199 amino acids: PaperBLAST, CDD, Compare to cluster

IORB_METTM / P80911 Indolepyruvate oxidoreductase subunit IorB; IOR; Indolepyruvate ferredoxin oxidoreductase subunit beta; EC 1.2.7.8 from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum)
PFams: POR
Heteromeric, 196 amino acids: PaperBLAST, CDD, Compare to cluster