GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for livF (L-phenylalanine ABC transporter, ATPase component 1 (LivF)) in L-phenylalanine catabolism

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Definition of livF

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 233-242 amino acids (1/3 heteromeric)

The first sequence in each cluster is the seed.

b3454 branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.4.1 / P22731 LivF aka B3454, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli
P22731 branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF (EC 7.4.2.2) from Escherichia coli (strain K12)
GB|AAC76479.2 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF from Escherichia coli K12
PFams: ABC_tran
Heteromeric, 237 amino acids: PaperBLAST, CDD, Compare to cluster

A0A159ZWL6 High-affinity branched-chain amino acid transport ATP-binding protein
233 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KC78 ABC transporter ATP-binding protein
242 amino acids: PaperBLAST, CDD, Compare to cluster