GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for livG (L-phenylalanine ABC transporter, ATPase component 2 (LivG)) in L-phenylalanine catabolism

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Definition of livG

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 255-260 amino acids (1/3 heteromeric)

The first sequence in each cluster is the seed.

b3455 branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivG (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.4.1 / P0A9S7 High-affinity branched-chain amino acid transport ATP-binding protein LivG aka B3455, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli
P0A9S7 branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivG (EC 7.4.2.2) from Escherichia coli (strain K12)
PFams: ABC_tran, BCA_ABC_TP_C
Heteromeric, 255 amino acids: PaperBLAST, CDD, Compare to cluster

A0A159ZWS6 High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG
255 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KC86 ABC transporter ATP-binding protein
260 amino acids: PaperBLAST, CDD, Compare to cluster