Other Characterized Proteins Similar to livH

Finding the characterized proteins for livH (L-phenylalanine ABC transporter, permease component 1 (LivH)) in L-phenylalanine catabolism

Or see clustering for step livH

Or see all steps for L-phenylalanine catabolism

Or cluster curated proteins matching a keyword

Definition of livH

• Curated sequence LIVH-MONOMER: branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH (EC 7.4.2.2). high-affinity branched-chain amino acid ABC transporter, permease protein LivH. High-affinity branched-chain amino acid transport system permease protein LivH aka B3457, component of Leucine; leucine/isoleucine/valine porter. branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH (EC 7.4.2.2)
• UniProt sequence A0A0D9B2B6: SubName: Full=Branched-chain amino acid ABC transporter permease LivH {ECO:0000313|EMBL:AMZ72283.1}; SubName: Full=Branched-chain amino acid transporter permease subunit LivH {ECO:0000313|EMBL:KJH87425.1}; SubName: Full=L-leucine ABC transporter membrane protein /L-isoleucine ABC transporter membrane protein /L-valine ABC transporter membrane protein {ECO:0000313|EMBL:TCV66884.1};
• Ignore hits to P21627 when looking for 'other' hits (High-affinity branched-chain amino acid transport system permease protein BraD, component of Branched chain amino acid uptake transporter. Transports alanine)
• UniProt sequence A0A165KC95: SubName: Full=ABC transporter permease {ECO:0000313|EMBL:KZT15319.1};

Fetched 3 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 3 other characterized sequences. (Found 4 hits including self hits.)

Removing ignored items reduces this to 2 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for livH.)

AZOBR_RS08235 L-proline and D-alanine ABC transporter, permease component 1 from Azospirillum brasilense Sp245
PFams: BPD_transp_2
Heteromeric, 301 amino acids: PaperBLAST, CDD, reanno::azobra:AZOBR_RS08235
57% identical to

A0A0D9B2B6 Branched-chain amino acid ABC transporter permease LivH; SubName: Full=Branched-chain amino acid transporter permease subunit LivH; SubName: Full=L-leucine ABC transporter membrane protein /L-isoleucine ABC transporter membrane protein /L-valine ABC transporter membrane protein
307 amino acids: PaperBLAST, CDD

TC 3.A.1.4.10 / Q8DQI0 ABC transporter membrane-spanning permease-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM from Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
PFams: BPD_transp_2, FecCD
Heteromeric, 292 amino acids: PaperBLAST, CDD, TCDB::Q8DQI0
40% identical to

A0A165KC95 ABC transporter permease
309 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for livH.)

TC 3.A.1.4.8 / P21627 High-affinity branched-chain amino acid transport system permease protein BraD, component of Branched chain amino acid uptake transporter. Transports alanine from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: BPD_transp_2
Heteromeric, 307 amino acids: PaperBLAST, CDD, TCDB::P21627
84% identical to

A0A0D9B2B6 Branched-chain amino acid ABC transporter permease LivH; SubName: Full=Branched-chain amino acid transporter permease subunit LivH; SubName: Full=L-leucine ABC transporter membrane protein /L-isoleucine ABC transporter membrane protein /L-valine ABC transporter membrane protein
307 amino acids: PaperBLAST, CDD