GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for livJ (L-phenylalanine ABC transporter, substrate-binding component LivJ/LivK) in L-phenylalanine catabolism

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Definition of livJ

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 367-375 amino acids (2/4 heteromeric)

The first sequence in each cluster is the seed.

b3458 L-leucine/L-phenylalanine ABC transporter periplasmic binding protein (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.4.1 / P04816 Livk aka B3458, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli
P04816 L-leucine/L-phenylalanine ABC transporter periplasmic binding protein (EC 7.4.2.2) from Escherichia coli (strain K12)
CH_107418 leucine-specific-binding protein LivK from Escherichia coli K12
PFams: Peripla_BP_5, Peripla_BP_6, ANF_receptor
Heteromeric, 369 amino acids: PaperBLAST, CDD, Compare to cluster

b3460 branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.4.1 / P0AD96 Leu/Ile/Val-binding protein LivJ aka B3460 aka LIV-BP, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli
P0AD96 branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein (EC 7.4.2.2) from Escherichia coli (strain K12)
PFams: Peripla_BP_5, Peripla_BP_6, ANF_receptor
Heteromeric, 367 amino acids: PaperBLAST, CDD, Compare to cluster

A0A160A0J6 Leucine ABC transporter subunit substrate-binding protein LivK
375 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KTD4 Branched chain amino acid ABC transporter substrate-binding protein
375 amino acids: PaperBLAST, CDD, Compare to cluster