Finding the characterized proteins for livJ (L-phenylalanine ABC transporter, substrate-binding component LivJ/LivK) in L-phenylalanine catabolism
Or see clustering for step livJ
Or see all steps for L-phenylalanine catabolism
Or cluster curated proteins matching a keyword
Definition of livJ
Fetched 4 sequences
Running ublast to find other characterized proteins with 40% identity and 70% coverage
Found hits to 2 other characterized sequences. (Found 4 hits including self hits.)
Removing ignored items reduces this to 1 close sequences.
(Sequences that are similar to these will not be high-confidence candidates for livJ.)
TC 3.A.1.4.3 / Q9L3M3 BraC, component of General L- (and D-)amino acid uptake porter (transports acidic, basic, polar, semipolar and hydrophobic amino acids). The amino and carboxyl groups do not need to be α since γ-aminobutyric acid (GABA) is a substrate. The system may function with additional binding proteins since L-alanine uptake is not dependent on BraC from Rhizobium leguminosarum (biovar viciae)
PFams: Peripla_BP_6, Peripla_BP_5, ANF_receptor
Heteromeric, 381 amino acids: PaperBLAST, CDD, TCDB::Q9L3M3
42% identical to
A0A160A0J6 Leucine ABC transporter subunit substrate-binding protein LivK
375 amino acids: PaperBLAST, CDD
(Sequences that are similar to these will still be high-confidence candidates for livJ.)
BRAC_PSEAE / P21175 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; LIVAT-BP; Leu/Ile/Val/Thr/Ala-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
TC 3.A.1.4.8 / P21175 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, component of Branched chain amino acid uptake transporter. Transports alanine from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: Peripla_BP_6, Peripla_BP_5, ANF_receptor
Heteromeric, 373 amino acids: PaperBLAST, CDD, SwissProt::P21175
69% identical to
A0A160A0J6 Leucine ABC transporter subunit substrate-binding protein LivK
375 amino acids: PaperBLAST, CDD