GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for livM (L-phenylalanine ABC transporter, permease component 2 (LivM)) in L-phenylalanine catabolism

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Definition of livM

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 358-425 amino acids (1/3 heteromeric)

The first sequence in each cluster is the seed.

A0A159ZYE0 High-affinity branched-chain amino acid ABC transporter permease LivM
418 amino acids: PaperBLAST, CDD, Compare to cluster

b3456 branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655
LIVM_ECOLI / P22729 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M from Escherichia coli (strain K12)
TC 3.A.1.4.1 / P22729 LivM aka B3456, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli
P22729 branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM (EC 7.4.2.2) from Escherichia coli (strain K12)
PFams: DUF3382, BPD_transp_2
Heteromeric, 425 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KER0 ABC transporter ATP-binding protein
358 amino acids: PaperBLAST, CDD, Compare to cluster