Other Characterized Proteins Similar to livM

Finding the characterized proteins for livM (L-phenylalanine ABC transporter, permease component 2 (LivM)) in L-phenylalanine catabolism

Or see clustering for step livM

Or see all steps for L-phenylalanine catabolism

Or cluster curated proteins matching a keyword

Definition of livM

• Curated sequence P22729: High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M. LivM aka B3456, component of Leucine; leucine/isoleucine/valine porter. branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM (EC 7.4.2.2). branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM (EC 7.4.2.2)
• UniProt sequence A0A159ZYE0: SubName: Full=High-affinity branched-chain amino acid ABC transporter permease LivM {ECO:0000313|EMBL:AMZ72284.1};
• Ignore hits to P21628 when looking for 'other' hits (High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine)
• UniProt sequence A0A165KER0: SubName: Full=ABC transporter ATP-binding protein {ECO:0000313|EMBL:KZT15410.1};

Fetched 3 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 1 other characterized sequences. (Found 2 hits including self hits.)

Removing ignored items reduces this to 0 close sequences.

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for livM.)

TC 3.A.1.4.8 / P21628 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: DUF3382, BPD_transp_2
Heteromeric, 417 amino acids: PaperBLAST, CDD, TCDB::P21628
75% identical to

A0A159ZYE0 High-affinity branched-chain amino acid ABC transporter permease LivM
418 amino acids: PaperBLAST, CDD