GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for paaB (phenylacetyl-CoA 1,2-epoxidase, subunit B) in L-phenylalanine catabolism

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Definition of paaB

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 93-95 amino acids (heteromeric)

The first sequence in each cluster is the seed.

b1389 phenylacetyl-CoA 1,2-epoxidase subunit B (EC 1.14.13.149) from Escherichia coli K-12 substr. MG1655
PAAB_ECOLI / P76078 1,2-phenylacetyl-CoA epoxidase, subunit B; 1,2-phenylacetyl-CoA monooxygenase, subunit B from Escherichia coli (strain K12)
P76078 phenylacetyl-CoA 1,2-epoxidase subunit B (EC 1.14.13.149) from Escherichia coli (strain K12)
PFams: PaaB
Heteromeric, 95 amino acids: PaperBLAST, CDD, Compare to cluster

Q845J5 ring 1,2-phenylacetyl-CoA epoxidase PaaB subunit (EC 1.14.13.149) from Pseudomonas sp. Y2
PFams: PaaB
Heteromeric, 93 amino acids: PaperBLAST, CDD, Compare to cluster