GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for paaJ1 (3-oxo-5,6-dehydrosuberyl-CoA thiolase) in L-phenylalanine catabolism

Or see other characterized proteins similar to paaJ1

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Definition of paaJ1

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 400-424 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

THIK_HUMAN / P09110 3-ketoacyl-CoA thiolase, peroxisomal; Acetyl-CoA acyltransferase; Beta-ketothiolase; Peroxisomal 3-oxoacyl-CoA thiolase; EC 2.3.1.16 from Homo sapiens (Human)
P09110 3-ketoacyl-CoA thiolase, peroxisomal (EC 2.3.1.223; EC 2.3.1.16) from Homo sapiens
PFams: Thiolase_N, Thiolase_C
424 amino acids: PaperBLAST, CDD, Compare to cluster

b1397 β-ketoadipyl-CoA thiolase (EC 2.3.1.223; EC 2.3.1.174) from Escherichia coli K-12 substr. MG1655
PAAJ_ECOLI / P0C7L2 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; EC 2.3.1.174; EC 2.3.1.223 from Escherichia coli (strain K12)
P0C7L2 β-ketoadipyl-CoA thiolase (EC 2.3.1.223; EC 2.3.1.174) from Escherichia coli (strain K12)
PFams: Thiolase_N, Thiolase_C
401 amino acids: PaperBLAST, CDD, Compare to cluster

A0A2Z5MFE9 3-oxoadipyl-CoA thiolase; EC=2.3.1.174
400 amino acids: PaperBLAST, CDD, Compare to cluster

B2SYZ2 3-oxoadipyl-CoA thiolase; EC=2.3.1.174
400 amino acids: PaperBLAST, CDD, Compare to cluster

D8ITH5 3-oxoadipyl-CoA thiolase; EC=2.3.1.174
401 amino acids: PaperBLAST, CDD, Compare to cluster

Q845J8 β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) from Pseudomonas sp. Y2
PFams: Thiolase_N, ketoacyl-synt, Thiolase_C
401 amino acids: PaperBLAST, CDD, Compare to cluster

HP15_2695 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) from Marinobacter adhaerens HP15
PFams: Thiolase_N, ketoacyl-synt, Thiolase_C
415 amino acids: PaperBLAST, CDD, Compare to cluster