GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for paaJ2 (3-oxoadipyl-CoA thiolase) in L-phenylalanine catabolism

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Definition of paaJ2

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 400-415 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b1397 β-ketoadipyl-CoA thiolase (EC 2.3.1.223; EC 2.3.1.174) from Escherichia coli K-12 substr. MG1655
PAAJ_ECOLI / P0C7L2 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; EC 2.3.1.174; EC 2.3.1.223 from Escherichia coli (strain K12)
P0C7L2 β-ketoadipyl-CoA thiolase (EC 2.3.1.223; EC 2.3.1.174) from Escherichia coli (strain K12)
PFams: Thiolase_N, Thiolase_C
401 amino acids: PaperBLAST, CDD, Compare to cluster

PCAF_PSEKB / Q8VPF1 Beta-ketoadipyl-CoA thiolase; 3-oxoadipyl-CoA thiolase; EC 2.3.1.174 from Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13)
PFams: Thiolase_N, ketoacyl-synt, Thiolase_C
401 amino acids: PaperBLAST, CDD, Compare to cluster

A0A2Z5MFE9 3-oxoadipyl-CoA thiolase; EC=2.3.1.174
400 amino acids: PaperBLAST, CDD, Compare to cluster

B2SYZ2 3-oxoadipyl-CoA thiolase; EC=2.3.1.174
400 amino acids: PaperBLAST, CDD, Compare to cluster

D8ITH5 3-oxoadipyl-CoA thiolase; EC=2.3.1.174
401 amino acids: PaperBLAST, CDD, Compare to cluster

Q845J8 β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) from Pseudomonas sp. Y2
PFams: Thiolase_N, ketoacyl-synt, Thiolase_C
401 amino acids: PaperBLAST, CDD, Compare to cluster

Q51956 subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida
PFams: Thiolase_N, ketoacyl-synt, Thiolase_C
400 amino acids: PaperBLAST, CDD, Compare to cluster

HP15_2695 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) from Marinobacter adhaerens HP15
PFams: Thiolase_N, ketoacyl-synt, Thiolase_C
415 amino acids: PaperBLAST, CDD, Compare to cluster