GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for HSERO_RS00885 (proline ABC transporter, permease component 1) in L-proline catabolism

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Definition of HSERO_RS00885

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 309-309 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A165KC95 ABC transporter permease
309 amino acids: PaperBLAST, CDD, Compare to cluster

D8IUY4 ABC-type branched-chain amino acid transport system, permease component protein
309 amino acids: PaperBLAST, CDD, Compare to cluster