GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for HSERO_RS00895 (proline ABC transporter, ATPase component 1) in L-proline catabolism

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Definition of HSERO_RS00895

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 255-260 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A165KC86 ABC transporter ATP-binding protein
260 amino acids: PaperBLAST, CDD, Compare to cluster

D8J1T6 ABC-type branched-chain amino acid transport system, ATPase component protein
255 amino acids: PaperBLAST, CDD, Compare to cluster