GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for PROT1 (proline transporter) in L-proline catabolism

Or see other characterized proteins similar to PROT1

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Definition of PROT1

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 436-473 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

PROT1_ARATH / P92961 Proline transporter 1; AtPROT1 from Arabidopsis thaliana (Mouse-ear cress)
TC 2.A.18.3.1 / P92961 Proline permease 1 from Arabidopsis thaliana (Mouse-ear cress)
RF|NP_181518.1 proline transporter 1 from Arabidopsis thaliana
PFams: Aa_trans
442 amino acids: PaperBLAST, CDD, Compare to cluster

PROT2_ARATH / P92962 Proline transporter 2; AtPROT2 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Aa_trans
439 amino acids: PaperBLAST, CDD, Compare to cluster

PROT1_ORYSJ / Q60DN5 Proline transporter 1; OsPROT from Oryza sativa subsp. japonica (Rice)
PFams: Aa_trans
473 amino acids: PaperBLAST, CDD, Compare to cluster

PROT3_ARATH / Q9SJP9 Proline transporter 3; AtPROT3 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Aa_trans
436 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.18.3.2 / Q9XE48 Proline/GABA/glycine betaine permease, ProT1 from Lycopersicon esculentum (Tomato)
PFams: Aa_trans
441 amino acids: PaperBLAST, CDD, Compare to cluster