GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for glaH (glutarate 2-hydroxylase, succinate-releasing (GlaH or CsiD)) in L-proline catabolism

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Definition of glaH

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 325-325 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b2659 glutarate hydroxylase GlaH (EC 1.14.11.64) from Escherichia coli K-12 substr. MG1655
GLAH_ECOLI / P76621 Glutarate 2-hydroxylase; G-2-H; Carbon starvation induced protein D; EC 1.14.11.- from Escherichia coli (strain K12)
P76621 glutarate hydroxylase GlaH (EC 1.14.11.64) from Escherichia coli (strain K12)
PFams: CsiD, TauD
325 amino acids: PaperBLAST, CDD, Compare to cluster

Q88IU0 glutarate dioxygenase monomer (EC 1.14.11.64) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PP_2909 glutarate hydroxylase from Pseudomonas putida KT2440
PFams: CsiD
325 amino acids: PaperBLAST, CDD, Compare to cluster