GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for natC (proline ABC transporter, permease component 1 (NatC)) in L-proline catabolism

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Definition of natC

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 372-377 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.4.2 / P74455 NatC aka SLL0146, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE
PFams: BPD_transp_2
Heteromeric, 372 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.4.6 / Q8YY08 NatC, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB)
PFams: BPD_transp_2
Heteromeric, 377 amino acids: PaperBLAST, CDD, Compare to cluster