GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for prdB (D-proline reductase, prdB component) in L-proline catabolism

Or see other characterized proteins similar to prdB

Or see all steps for L-proline catabolism

Or cluster curated proteins matching a keyword

Definition of prdB

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 241-242 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q17ZY6 D-proline reductase (EC 1.21.4.1) from Clostridioides difficile
PFams: GRDB
241 amino acids: PaperBLAST, CDD, Compare to cluster

PRDB_ACESD / Q9Z4Q7 D-proline reductase subunit gamma; D-proline reductase 26 kDa subunit; EC 1.21.4.1 from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654) (Clostridium sticklandii)
Q9Z4Q7 26-kDa subunit from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654)
SP|Q9Z4Q7 D-proline reductase, PrdB subunit, selenocysteine-containing; EC 1.21.4.1 from Clostridium sticklandii
PFams: GRDB
242 amino acids: PaperBLAST, CDD, Compare to cluster