GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to prdF

Finding the characterized proteins for prdF (proline racemase) in L-proline catabolism

Or see clustering for step prdF

Or see all steps for L-proline catabolism

Or cluster curated proteins matching a keyword

Definition of prdF

Fetched 8 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 15 other characterized sequences. (Found 23 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for prdF.)

H3ZMH8 trans-L-3-hydroxyproline dehydratase (EC 4.2.1.77) from Thermococcus litoralis
PFams: Pro_racemase
348 amino acids: PaperBLAST, CDD, BRENDA::H3ZMH8
46% identical to

Q9L4Q3 proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii
PFams: Pro_racemase, PhzC-PhzF
299 amino acids: PaperBLAST, CDD

T3HPD_BACHK / Q6HMS9 Trans-3-hydroxy-L-proline dehydratase; T3LHyp dehydratase; t3HypD; Trans-L-3-hydroxyproline dehydratase; EC 4.2.1.77 from Bacillus thuringiensis subsp. konkukian (strain 97-27)
PFams: Pro_racemase
334 amino acids: PaperBLAST, CDD, SwissProt::Q6HMS9
43% identical to

Q9L4Q3 proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii
PFams: Pro_racemase, PhzC-PhzF
299 amino acids: PaperBLAST, CDD

T3HPD_BACCR / Q81HB1 Trans-3-hydroxy-L-proline dehydratase; T3LHyp dehydratase; t3HypD; Trans-L-3-hydroxyproline dehydratase; EC 4.2.1.77 from Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)
PFams: Pro_racemase
334 amino acids: PaperBLAST, CDD, SwissProt::Q81HB1
43% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

T3HPD_BACC1 / Q73CS0 Trans-3-hydroxy-L-proline dehydratase; T3LHyp dehydratase; t3HypD; Trans-L-3-hydroxyproline dehydratase; EC 4.2.1.77 from Bacillus cereus (strain ATCC 10987 / NRS 248)
PFams: Pro_racemase
334 amino acids: PaperBLAST, CDD, SwissProt::Q73CS0
43% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

4HPE2_OCHA4 / A6WXX7 4-hydroxyproline 2-epimerase 2; 4Hyp 2-epimerase 2; 4HypE 2; EC 5.1.1.8 from Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / JCM 21032 / NBRC 15819 / NCTC 12168)
PFams: Pro_racemase, PhzC-PhzF
337 amino acids: PaperBLAST, CDD, SwissProt::A6WXX7
43% identical to

B8LFE4 proline racemase (EC 5.1.1.4) from Trypanosoma vivax
PFams: Pro_racemase
345 amino acids: PaperBLAST, CDD

4HYPE_RHIME / Q92WS1 Probable 4-hydroxyproline 2-epimerase; 4Hyp 2-epimerase; 4HypE; EC 5.1.1.8 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
PFams: Pro_racemase
333 amino acids: PaperBLAST, CDD, SwissProt::Q92WS1
42% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

4HYPE_STRRD / D2AV87 4-hydroxyproline 2-epimerase; 4Hyp 2-epimerase; 4HypE; EC 5.1.1.8 from Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)
PFams: Pro_racemase, PhzC-PhzF
333 amino acids: PaperBLAST, CDD, SwissProt::D2AV87
41% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

4HYPE_BRUSU / Q8FYS0 4-hydroxyproline 2-epimerase; 4Hyp 2-epimerase; 4HypE; Hydroxyproline-2-epimerase; BsHyPRE; EC 5.1.1.8 from Brucella suis biovar 1 (strain 1330)
Q8FYS0 4-hydroxyproline epimerase (EC 5.1.1.8) from Brucella suis
PFams: Pro_racemase, PhzC-PhzF
333 amino acids: PaperBLAST, CDD, SwissProt::Q8FYS0
42% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

4HYPE_BRUME / Q8YJ29 4-hydroxyproline epimerase; Hydroxyproline-2-epimerase; BmHyPRE; EC 5.1.1.8 from Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Q8YJ29 4-hydroxyproline epimerase (EC 5.1.1.8) from Brucella melitensis
PFams: Pro_racemase, PhzC-PhzF
333 amino acids: PaperBLAST, CDD, SwissProt::Q8YJ29
42% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

4HYPE_BRUA2 / Q2YLF3 4-hydroxyproline epimerase; Hydroxyproline-2-epimerase; HyPRE; EC 5.1.1.8 from Brucella abortus (strain 2308)
4HYPE_BRUAB / Q57B94 4-hydroxyproline epimerase; Hydroxyproline-2-epimerase; BaHyPRE; EC 5.1.1.8 from Brucella abortus biovar 1 (strain 9-941)
Q2YLF3 4-hydroxyproline epimerase (EC 5.1.1.8) from Brucella abortus
Q57B94 4-hydroxyproline epimerase (EC 5.1.1.8) from Brucella abortus
PFams: Pro_racemase, PhzC-PhzF
333 amino acids: PaperBLAST, CDD, BRENDA::Q2YLF3
42% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

T3HPD_AZOBR / V5YXI5 Trans-3-hydroxy-L-proline dehydratase; T3LHyp dehydratase; t3HypD; Trans-L-3-hydroxyproline dehydratase; EC 4.2.1.77 from Azospirillum brasilense
V5YXI5 trans-L-3-hydroxyproline dehydratase (EC 4.2.1.77) from Azospirillum brasilense
V5YXI5 trans-3-hydroxy-L-proline dehydratase subunit (EC 4.2.1.77) from Azospirillum brasilense
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD, SwissProt::V5YXI5
41% identical to

Q9L4Q3 proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii
PFams: Pro_racemase, PhzC-PhzF
299 amino acids: PaperBLAST, CDD

T3HPD_BURCM / Q0B950 Trans-3-hydroxy-L-proline dehydratase; T3LHyp dehydratase; t3HypD; Trans-L-3-hydroxyproline dehydratase; EC 4.2.1.77 from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD, SwissProt::Q0B950
40% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

4HYPE_STAND / D7A0Y3 4-hydroxyproline 2-epimerase; 4Hyp 2-epimerase; 4HypE; EC 5.1.1.8 from Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)
PFams: Pro_racemase
333 amino acids: PaperBLAST, CDD, SwissProt::D7A0Y3
41% identical to

PRAC_CLODI / A8DEZ8 Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile (Peptoclostridium difficile)
A8DEZ8 proline racemase (EC 5.1.1.4) from Clostridioides difficile
Q17ZY4 proline racemase (EC 5.1.1.4) from Clostridioides difficile
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD

3HYPE_BURM1 / A9AKG8 3-hydroxyproline 2-epimerase; 3Hyp 2-epimerase; 3HypE; EC 5.1.1.- from Burkholderia multivorans (strain ATCC 17616 / 249)
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD, SwissProt::A9AKG8
41% identical to

Q9L4Q3 proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii
PFams: Pro_racemase, PhzC-PhzF
299 amino acids: PaperBLAST, CDD

T3HPD_BURCH / A0B0B8 Trans-3-hydroxy-L-proline dehydratase; T3LHyp dehydratase; t3HypD; Trans-L-3-hydroxyproline dehydratase; EC 4.2.1.77 from Burkholderia cenocepacia (strain HI2424)
PFams: Pro_racemase
335 amino acids: PaperBLAST, CDD, SwissProt::A0B0B8
40% identical to

Q9L4Q3 proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii
PFams: Pro_racemase, PhzC-PhzF
299 amino acids: PaperBLAST, CDD