GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for proV (proline ABC transporter, ATPase component ProV) in L-proline catabolism

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Definition of proV

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 400-400 amino acids (1/2 heteromeric)

The first sequence in each cluster is the seed.

b2677 glycine betaine ABC transporter ATP binding subunit ProV (EC 7.6.2.9) from Escherichia coli K-12 substr. MG1655
PROV_ECOLI / P14175 Glycine betaine/proline betaine transport system ATP-binding protein ProV from Escherichia coli (strain K12)
TC 3.A.1.12.1 / P14175 ProV aka B2677, component of Glycine betaine/proline porter, ProU or ProVWX (also transports proline betaine, carnitine, dimethyl proline, homobetaine, γ-butyrobetaine and choline with low affinity) from Escherichia coli
P14175 glycine betaine ABC transporter ATP binding subunit ProV (EC 7.6.2.9) from Escherichia coli (strain K12)
GB|AAC75724.1 glycine betaine/l-proline transport atp-binding protein prov from Escherichia coli K12
PFams: ABC_tran, CBS
Heteromeric, 400 amino acids: PaperBLAST, CDD, Compare to cluster

PROV_SALTY / P17328 Glycine betaine/proline betaine transport system ATP-binding protein ProV from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: ABC_tran, CBS
400 amino acids: PaperBLAST, CDD, Compare to cluster