GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for proY (proline:H+ symporter) in L-proline catabolism

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Definition of proY

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 456-627 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

TC 2.A.3.10.22 / Q2VQZ4 Arbuscular mycorrhizal fungal proline:H+ symporter, AAP1 (binds and probably transports nonpolar, hydrophobic amino acids) from Glomus mosseae
PFams: AA_permease, AA_permease_2
536 amino acids: PaperBLAST, CDD, Compare to cluster

PUT4_YEAST / P15380 Proline-specific permease from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TC 2.A.3.10.3 / P15380 Proline permease from Saccharomyces cerevisiae (Baker's yeast)
RF|NP_014993.1 proline-specific permease from Saccharomyces cerevisiae
PFams: AA_permease, AA_permease_2
627 amino acids: PaperBLAST, CDD, Compare to cluster

GB|CAA56191.1 proline-specific permease (proline transport protein) from Emericella nidulans
PFams: AA_permease_2, AA_permease
550 amino acids: PaperBLAST, CDD, Compare to cluster

GABP_BACSU / P46349 GABA permease; 4-amino butyrate transport carrier; Gamma-aminobutyrate permease; Proline transporter GabP from Bacillus subtilis (strain 168)
TC 2.A.3.1.5 / P46349 β-alanine/γ-aminobutyrate/proline/3,4-dehydroproline:H+ symporter, GabP from Bacillus subtilis
PFams: Spore_permease, AA_permease_2, AA_permease
469 amino acids: PaperBLAST, CDD, Compare to cluster

PUT4_SCHPO / Q9URZ3 Probable proline-specific permease put4 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: AA_permease, AA_permease_2
552 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.3.1.23 / P0AAE2 ProY of 457 aas and 12 TMSs from Escherichia coli (strain K12)
PFams: AA_permease_2, Spore_permease, AA_permease
457 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.3.1.6 / P37460 Proline-specific permease (ProY) from Salmonella typhimurium
PFams: AA_permease_2, Spore_permease, AA_permease
456 amino acids: PaperBLAST, CDD, Compare to cluster