GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for pccB (propionyl-CoA carboxylase, beta subunit) in propionate catabolism

Or see other characterized proteins similar to pccB

Or see all steps for propionate catabolism

Or cluster curated proteins matching a keyword

Definition of pccB

Fetched 16 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 16 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 510-572 amino acids (10/16 heteromeric)

The first sequence in each cluster is the seed.

PCCB_HUMAN / P05166 Propionyl-CoA carboxylase beta chain, mitochondrial; PCCase subunit beta; Propanoyl-CoA:carbon dioxide ligase subunit beta; EC 6.4.1.3 from Homo sapiens (Human)
P05166 propionyl-CoA carboxylase (subunit 2/2) (EC 6.4.1.3) from Homo sapiens
P05166 propionyl-CoA carboxylase β chain, mitochondrial (EC 6.4.1.3) from Homo sapiens
PFams: Carboxyl_trans
Heteromeric, 539 amino acids: PaperBLAST, CDD, Compare to cluster

Q20676 propionyl-CoA carboxylase (subunit 1/2) (EC 6.4.1.3) from Caenorhabditis elegans
PFams: Carboxyl_trans
Heteromeric, 536 amino acids: PaperBLAST, CDD, Compare to cluster

Q9X4K7 propionyl-CoA carboxylase (EC 6.4.1.3) from Streptomyces coelicolor
PFams: Carboxyl_trans
530 amino acids: PaperBLAST, CDD, Compare to cluster

PCCB_HALMT / I3R7F1 Propionyl-CoA carboxylase, carboxyltransferase subunit; PCC; EC 6.4.1.3 from Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) (Halobacterium mediterranei)
I3R7F1 propionyl-CoA carboxylase (subunit 2/3) (EC 6.4.1.3) from Haloferax mediterranei
PFams: Carboxyl_trans
Heteromeric, 516 amino acids: PaperBLAST, CDD, Compare to cluster

PCCB_SACEN / P53003 Propionyl-CoA carboxylase beta chain; PCCase; Propanoyl-CoA:carbon dioxide ligase; EC 6.4.1.3 from Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)
PFams: Carboxyl_trans
546 amino acids: PaperBLAST, CDD, Compare to cluster

PCCB_PIG / P79384 Propionyl-CoA carboxylase beta chain, mitochondrial; PCCase subunit beta; Propanoyl-CoA:carbon dioxide ligase subunit beta; EC 6.4.1.3 from Sus scrofa (Pig)
PFams: Carboxyl_trans
539 amino acids: PaperBLAST, CDD, Compare to cluster

PCCB_ROSDO / Q168G2 Propionyl-CoA carboxylase beta chain; EC 6.4.1.3 from Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
PFams: Carboxyl_trans
510 amino acids: PaperBLAST, CDD, Compare to cluster

PCCB_RHOS4 / Q3J4E3 Propionyl-CoA carboxylase beta chain; PCCase; Propanoyl-CoA:carbon dioxide ligase; EC 6.4.1.3 from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Q3J4E3 propionyl-CoA carboxylase β subunit (EC 6.4.1.3) from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
PFams: Carboxyl_trans
Heteromeric, 510 amino acids: PaperBLAST, CDD, Compare to cluster

PCCB_MOUSE / Q99MN9 Propionyl-CoA carboxylase beta chain, mitochondrial; PCCase subunit beta; Propanoyl-CoA:carbon dioxide ligase subunit beta; EC 6.4.1.3 from Mus musculus (Mouse)
Q99MN9 propionyl-CoA carboxylase (EC 6.4.1.3) from Mus musculus
PFams: Carboxyl_trans
541 amino acids: PaperBLAST, CDD, Compare to cluster

Q877I3 acetyl-CoA carboxylase (subunit 1/3) (EC 6.4.1.2); propionyl-CoA carboxylase (subunit 2/3) (EC 6.4.1.3) from Acidianus brierleyi
Q877I3 acyl CoA carboxylase carboxyltransferase subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) from Acidianus brierleyi
PFams: Carboxyl_trans
Heteromeric, 524 amino acids: PaperBLAST, CDD, Compare to cluster

Q5UWC0 propionyl-CoA carboxylase (EC 6.4.1.3) from Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
PFams: Carboxyl_trans
572 amino acids: PaperBLAST, CDD, Compare to cluster

A9WEI4 propionyl-CoA carboxylase α subunit (EC 6.4.1.3) from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
PFams: Carboxyl_trans
Heteromeric, 535 amino acids: PaperBLAST, CDD, Compare to cluster

A9WKJ2 propionyl-CoA carboxylase β subunit (EC 6.4.1.3) from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
PFams: Carboxyl_trans
Heteromeric, 514 amino acids: PaperBLAST, CDD, Compare to cluster

P07633 propionyl-CoA carboxylase β subunit (EC 6.4.1.3) from Rattus norvegicus
PFams: Carboxyl_trans
Heteromeric, 541 amino acids: PaperBLAST, CDD, Compare to cluster

Dshi_0718 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) from Dinoroseobacter shibae DFL-12
PFams: Carboxyl_trans
Heteromeric, 510 amino acids: PaperBLAST, CDD, Compare to cluster

Dsui_0517 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) from Dechlorosoma suillum PS
PFams: Carboxyl_trans
Heteromeric, 510 amino acids: PaperBLAST, CDD, Compare to cluster