GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to patA

Finding the characterized proteins for patA (putrescine aminotransferase (PatA/SpuC)) in putrescine catabolism

Or see clustering for step patA

Or see all steps for putrescine catabolism

Or cluster curated proteins matching a keyword

Definition of patA

Fetched 2 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 16 other characterized sequences. (Found 18 hits including self hits.)

Removing ignored items reduces this to 6 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for patA.)

Q7XN12 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa
PFams: Aminotran_3
497 amino acids: PaperBLAST, CDD, BRENDA::Q7XN12
44% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

GATP1_ORYSJ / Q7XN11 Gamma-aminobutyrate transaminase 1, mitochondrial; EC 2.6.1.96 from Oryza sativa subsp. japonica (Rice)
Q7XN11 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa
PFams: Aminotran_3
516 amino acids: PaperBLAST, CDD, SwissProt::Q7XN11
43% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

O82521 vanillin aminotransferase from Capsicum chinense
PFams: Aminotran_3
459 amino acids: PaperBLAST, CDD, metacyc::MONOMER-13529
43% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

GATP4_ORYSJ / Q6ZH29 Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa subsp. japonica (Rice)
Q6ZH29 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa
PFams: Aminotran_3
483 amino acids: PaperBLAST, CDD, SwissProt::Q6ZH29
42% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

DOED_HALED / E1V7V7 Diaminobutyrate--2-oxoglutarate transaminase; EC 2.6.1.76 from Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
E1V7V7 diaminobutanoate--2-oxoglutarate transaminase from Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
PFams: Aminotran_3
469 amino acids: PaperBLAST, CDD, SwissProt::E1V7V7
42% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

LYSJ_THET2 / Q93R93 [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.- from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Q93R93 L-2-aminoadipate semialdehyde transaminase monomer from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: Aminotran_3
395 amino acids: PaperBLAST, CDD, SwissProt::Q93R93
42% identical to

b3073 putrescine aminotransferase (EC 2.6.1.29) from Escherichia coli K-12 substr. MG1655
PAT_ECOLI / P42588 Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.- from Escherichia coli (strain K12)
P42588 putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli
P42588 putrescine aminotransferase (EC 2.6.1.29) from Escherichia coli (strain K12)
PFams: Aminotran_3
459 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for patA.)

AO356_13150 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens FW300-N2C3
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_13150
78% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

PS417_27130 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas simiae WCS417
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, reanno::WCS417:GFF5299
78% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

AO353_08585 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens FW300-N2E3
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, reanno::pseudo3_N2E3:AO353_08585
78% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

Pf6N2E2_4512 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens FW300-N2E2
PFams: Aminotran_3
454 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_4512
77% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

Sama_2643 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Shewanella amazonensis SB2B
PFams: Aminotran_3
460 amino acids: PaperBLAST, CDD, reanno::SB2B:6938540
64% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

BPHYT_RS23155 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Burkholderia phytofirmans PsJN
PFams: Aminotran_3
482 amino acids: PaperBLAST, CDD, reanno::BFirm:BPHYT_RS23155
58% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

GATP1_SOLLC / Q84P54 Gamma aminobutyrate transaminase 1, mitochondrial; Gamma-aminobutyrate transaminase isozyme 1; LeGABA-TP1; SlGABA-T1; EC 2.6.1.96 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Q84P54 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P54 gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
PFams: Aminotran_3
515 amino acids: PaperBLAST, CDD, SwissProt::Q84P54
45% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

GATP3_SOLLC / Q84P52 Gamma aminobutyrate transaminase 3, chloroplastic; Gamma-aminobutyrate transaminase isozyme 3; LeGABA-TP3; SlGABA-T3; EC 2.6.1.96 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Q84P52 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum
PFams: Aminotran_3
520 amino acids: PaperBLAST, CDD, SwissProt::Q84P52
44% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

GATP2_SOLLC / Q84P53 Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Q84P53 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53 gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
PFams: Aminotran_3
458 amino acids: PaperBLAST, CDD, SwissProt::Q84P53
44% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD

GATP_ARATH / Q94CE5 Gamma-aminobutyrate transaminase POP2, mitochondrial; AtGABA-T; Gamma-aminobutyric acid aminotransferase 1; Protein HEXENAL RESPONSE 1; Protein POLLEN-PISTIL INCOMPATIBILITY 2; AtPOP2; EC 2.6.1.96 from Arabidopsis thaliana (Mouse-ear cress)
Q94CE5 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Arabidopsis thaliana
Q94CE5 γ-aminobutyrate transaminase (pyruvate dependent) (EC 2.6.1.96) from Arabidopsis thaliana
PFams: Aminotran_3
504 amino acids: PaperBLAST, CDD, BRENDA::Q94CE5
42% identical to

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD