GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for patA (putrescine aminotransferase (PatA/SpuC)) in putrescine catabolism

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Definition of patA

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by cluster

Escherichia coli

b3073 putrescine aminotransferase (EC 2.6.1.29) from Escherichia coli K-12 substr. MG1655
PAT_ECOLI / P42588 Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.- from Escherichia coli (strain K12)
P42588 putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli
P42588 putrescine aminotransferase (EC 2.6.1.29) from Escherichia coli (strain K12)
PFams: Aminotran_3
459 amino acids: PaperBLAST, CDD (Singleton 1)

Pseudomonas aeruginosa

SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD (Singleton 2)