GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for potB (putrescine ABC transporter, permease component 1 (PotB/PotH)) in putrescine catabolism

Or see other characterized proteins similar to potB

Or see all steps for putrescine catabolism

Or cluster curated proteins matching a keyword

Definition of potB

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Escherichia coli

b1125 spermidine preferential ABC transporter membrane subunit PotB (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.11.1 / P0AFK4 Spermidine/putrescine transport system permease protein PotB aka B1125, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli
P0AFK4 spermidine preferential ABC transporter membrane subunit PotB (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli (strain K12)
CH_088337 spermidine/putrescine ABC transporter, permease protein PotB from Escherichia coli K12
PFams: BPD_transp_1
Heteromeric, 275 amino acids: PaperBLAST, CDD (Cluster 1)

b0856 putrescine ABC transporter membrane subunit PotH (EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.11.2 / P31135 PotH aka B0856, component of Putrescine porter from Escherichia coli
P31135 putrescine ABC transporter membrane subunit PotH (EC 7.6.2.16) from Escherichia coli (strain K12)
CH_088338 putrescine transport system permease protein PotH from Escherichia coli K12
PFams: BPD_transp_1
Heteromeric, 317 amino acids: PaperBLAST, CDD (Cluster 1)

Streptococcus pneumoniae

TC 3.A.1.11.7 / Q97Q43 Spermidine/putrescine ABC transporter, permease protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
PFams: BPD_transp_1
Heteromeric, 275 amino acids: PaperBLAST, CDD (Cluster 1)