GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to potD

Finding the characterized proteins for potD (putrescine ABC transporter, substrate-binding component (PotD/PotF)) in putrescine catabolism

Or see clustering for step potD

Or see all steps for putrescine catabolism

Or cluster curated proteins matching a keyword

Definition of potD

Fetched 4 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 1 other characterized sequences. (Found 5 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for potD.)

SPUE_PSEAE / Q9I6J0 Spermidine-binding periplasmic protein SpuE from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: SBP_bac_8, SBP_bac_1, SBP_bac_11, SBP_bac_6
365 amino acids: PaperBLAST, CDD, SwissProt::Q9I6J0
58% identical to

SPUD_PSEAB / Q02UB7 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain UCBPP-PA14)
SPUD_PSEAE / Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Lipoprotein_8, SBP_bac_11, SBP_bac_8, SBP_bac_1, SBP_bac_6
367 amino acids: PaperBLAST, CDD