GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for potD (putrescine ABC transporter, substrate-binding component (PotD/PotF)) in putrescine catabolism

Or see other characterized proteins similar to potD

Or see all steps for putrescine catabolism

Or cluster curated proteins matching a keyword

Definition of potD

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Escherichia coli

b1123 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
POTD_ECOLI / P0AFK9 Spermidine/putrescine-binding periplasmic protein; SPBP from Escherichia coli (strain K12)
TC 3.A.1.11.1 / P0AFK9 Spermidine/putrescine-binding periplasmic protein PotD aka B1123, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli
P0AFK9 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli (strain K12)
CH_088339 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein PotD from Escherichia coli K12
PFams: Lipoprotein_8, SBP_bac_1, SBP_bac_11, SBP_bac_8, SBP_bac_6
Heteromeric, 348 amino acids: PaperBLAST, CDD (Cluster 1)

b0854 putrescine ABC transporter periplasmic binding protein (EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
POTF_ECOLI / P31133 Putrescine-binding periplasmic protein from Escherichia coli (strain K12)
TC 3.A.1.11.2 / P31133 PotF aka B0854, component of Putrescine porter from Escherichia coli
P31133 putrescine ABC transporter periplasmic binding protein (EC 7.6.2.16) from Escherichia coli (strain K12)
PFams: SBP_bac_1, SBP_bac_11, SBP_bac_8, SBP_bac_6
Heteromeric, 370 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas aeruginosa

SPUD_PSEAB / Q02UB7 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain UCBPP-PA14)
SPUD_PSEAE / Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Lipoprotein_8, SBP_bac_11, SBP_bac_8, SBP_bac_1, SBP_bac_6
367 amino acids: PaperBLAST, CDD (Cluster 1)

Streptococcus pneumoniae

TC 3.A.1.11.7 / Q97Q45 Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
PFams: Lipoprotein_8, SBP_bac_1, SBP_bac_11, SBP_bac_8, SBP_bac_6
Heteromeric, 356 amino acids: PaperBLAST, CDD (Cluster 1)