GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for dctM (pyruvate TRAP transporter, large permease component) in pyruvate catabolism

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Definition of dctM

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (2/2 heteromeric)

TC 2.A.56.3.4 / D5ATK1 TRAP C4-dicarboxylate transport system permease, DctM-2 subunit, component of The 2-ketomonocarboxylate transporter (presented in order of affinity - 2-oxovalerate [highest affinity, KD=0.1 μM], 2-oxoisovalerate, 2-oxobutyrate, 2-oxoisocaproate, 2-oxo-3-methylvalerate, pyruvate [lowest affinity, KD=3 μM]) from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
PFams: DctM
Heteromeric, 611 amino acids: PaperBLAST, CDD

TC 2.A.56.3.3 / Q8YSQ7 Alr3027 protein, component of The 2-oxo monocarboxylate transporter (Pernil et al., 2010). Transports pyruvate which is inhibited by various 2-ketoacids from Nostoc sp. (strain PCC 7120 / UTEX 2576)
PFams: DctM
Heteromeric, 445 amino acids: PaperBLAST, CDD