GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for dctQ (pyruvate TRAP transporter, small permease component) in pyruvate catabolism

Or see other characterized proteins similar to dctQ

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Definition of dctQ

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 184-190 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 2.A.56.3.4 / D5ATK0 Tripartite ATP-independent periplasmic transporter, DctQ-2 component, component of The 2-ketomonocarboxylate transporter (presented in order of affinity - 2-oxovalerate [highest affinity, KD=0.1 μM], 2-oxoisovalerate, 2-oxobutyrate, 2-oxoisocaproate, 2-oxo-3-methylvalerate, pyruvate [lowest affinity, KD=3 μM]) from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
PFams: DctQ
Heteromeric, 190 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.56.3.3 / Q8YSQ8 Alr3026 protein, component of The 2-oxo monocarboxylate transporter (Pernil et al., 2010). Transports pyruvate which is inhibited by various 2-ketoacids from Nostoc sp. (strain PCC 7120 / UTEX 2576)
PFams: DctQ
Heteromeric, 184 amino acids: PaperBLAST, CDD, Compare to cluster