GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for ybdD (small subunit of pyruvate transporter (YbdD)) in pyruvate catabolism

Or see other characterized proteins similar to ybdD

Or see all steps for pyruvate catabolism

Or cluster curated proteins matching a keyword

Definition of ybdD

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 64-65 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

P0AAS9 Uncharacterized protein YbdD
65 amino acids: PaperBLAST, CDD, Compare to cluster

RR42_RS20510 required for pyruvate transport, with cstA-like RR42_RS20515 from Cupriavidus basilensis 4G11
PFams: Sel_put
64 amino acids: PaperBLAST, CDD, Compare to cluster