GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for LRA1 (L-rhamnofuranose dehydrogenase) in L-rhamnose catabolism

Or see other characterized proteins similar to LRA1

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Or cluster curated proteins matching a keyword

Definition of LRA1

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 254-260 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A3LZU7 NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
RM1DH_PICST / A3LZU7 L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (Yeast) (Pichia stipitis)
PFams: adh_short, KR, adh_short_C2
258 amino acids: PaperBLAST, CDD, Compare to cluster

RHAD_THEAC / Q9HK58 L-rhamnose 1-dehydrogenase (NADP(+)); RHAD; EC 1.1.1.377 from Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
PFams: adh_short, KR, adh_short_C2
254 amino acids: PaperBLAST, CDD, Compare to cluster

C1DMX5 NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
PFams: adh_short, KR, adh_short_C2
256 amino acids: PaperBLAST, CDD, Compare to cluster

Q1NEJ0 NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp. (strain SKA58)
PFams: adh_short, KR, adh_short_C2
254 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS28235 L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans PsJN
PFams: adh_short, KR, adh_short_C2
260 amino acids: PaperBLAST, CDD, Compare to cluster