GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for LRA6 (2,4-diketo-3-deoxyrhamnonate hydrolase) in L-rhamnose catabolism

Or see other characterized proteins similar to LRA6

Or see all steps for L-rhamnose catabolism

Or cluster curated proteins matching a keyword

Definition of LRA6

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 281-285 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q1NEI7 L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC from Sphingomonas sp. (strain SKA58)
PFams: FAA_hydrolase
285 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS34210 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans PsJN
PFams: FAA_hydrolase
282 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b21112 L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase from Sinorhizobium meliloti 1021
PFams: FAA_hydrolase
281 amino acids: PaperBLAST, CDD, Compare to cluster