GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rhaA (L-rhamnose isomerase) in L-rhamnose catabolism

Or see other characterized proteins similar to rhaA

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Definition of rhaA

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 12 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 412-426 amino acids (not heteromeric)

A4XHV7 L-rhamnose isomerase (EC 5.3.1.14) from Caldicellulosiruptor saccharolyticus
PFams: RhaA
426 amino acids: PaperBLAST, CDD, Compare to cluster

D5LNE5 L-rhamnose isomerase (EC 5.3.1.14) from Thermoanaerobacterium saccharolyticum
PFams: RhaA
425 amino acids: PaperBLAST, CDD, Compare to cluster

D9TIY8 L-rhamnose isomerase (EC 5.3.1.14) from Caldicellulosiruptor obsidiansis
PFams: RhaA
426 amino acids: PaperBLAST, CDD, Compare to cluster

L7VQ35 L-rhamnose isomerase (EC 5.3.1.14) from Thermoclostridium stercorarium subsp. stercorarium
PFams: RhaA
425 amino acids: PaperBLAST, CDD, Compare to cluster

b3903 L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli K-12 substr. MG1655
P32170 L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli (strain K12)
RHAA_ECOLI / P32170 L-rhamnose isomerase; EC 5.3.1.14 from Escherichia coli (strain K12)
P32170 L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli
PFams: RhaA
419 amino acids: PaperBLAST, CDD, Compare to cluster

Dshi_2437 L-rhamnose isomerase (EC 5.3.1.14) from Dinoroseobacter shibae DFL-12
PFams: RhaA
412 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS00675 L-rhamnose isomerase (EC 5.3.1.14) from Klebsiella michiganensis M5al
PFams: RhaA
419 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 397-431 amino acids (not heteromeric)

B8E1U6 L-rhamnose isomerase (EC 5.3.1.14) from Dictyoglomus turgidum
PFams: RhaA
397 amino acids: PaperBLAST, CDD, Compare to cluster

Q75WH8 L-rhamnose isomerase (EC 5.3.1.14) from Pseudomonas stutzeri
430 amino acids: PaperBLAST, CDD, Compare to cluster

Echvi_1573 L-rhamnose isomerase (EC 5.3.1.14) from Echinicola vietnamensis KMM 6221, DSM 17526
427 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS22240 L-rhamnose isomerase (EC 5.3.1.14) from Herbaspirillum seropedicae SmR1
PFams: AP_endonuc_2
431 amino acids: PaperBLAST, CDD, Compare to cluster

SMc02321 L-rhamnose isomerase (EC 5.3.1.14) from Sinorhizobium meliloti 1021
430 amino acids: PaperBLAST, CDD, Compare to cluster