GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rhaB (L-rhamnulokinase) in L-rhamnose catabolism

Or see other characterized proteins similar to rhaB

Or see all steps for L-rhamnose catabolism

Or cluster curated proteins matching a keyword

Definition of rhaB

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by cluster

Dinoroseobacter shibae

Dshi_2429 Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Dinoroseobacter shibae DFL-12
PFams: FGGY_N
461 amino acids: PaperBLAST, CDD (Cluster 1)

Echinicola vietnamensis

Echvi_1574 Rhamnulokinase (EC 2.7.1.5) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: FGGY_N
448 amino acids: PaperBLAST, CDD (Singleton 1)

Escherichia coli

b3904 rhamnulokinase (EC 2.7.1.5) from Escherichia coli K-12 substr. MG1655
RHAB_ECOLI / P32171 L-Rhamnulokinase; RhaB; RhuK; ATP:L-rhamnulose phosphotransferase; L-rhamnulose 1-kinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli (strain K12)
P32171 rhamnulokinase (EC 2.7.1.5) from Escherichia coli (strain K12)
PFams: FGGY_N, FGGY_C
489 amino acids: PaperBLAST, CDD (Cluster 2)

RHAB_ECOUT / Q1R415 Rhamnulokinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli (strain UTI89 / UPEC)
PFams: FGGY_N, FGGY_C
489 amino acids: PaperBLAST, CDD (Cluster 2)

Herbaspirillum seropedicae

HSERO_RS22200 Rhamnulokinase (EC 2.7.1.5) from Herbaspirillum seropedicae SmR1
PFams: FGGY_N, FGGY_C
459 amino acids: PaperBLAST, CDD (Cluster 1)

Klebsiella michiganensis

BWI76_RS00680 Rhamnulokinase (EC 2.7.1.5) from Klebsiella michiganensis M5al
PFams: FGGY_N, FGGY_C
488 amino acids: PaperBLAST, CDD (Cluster 2)

Rhizobium leguminosarum

Q7BSH0 rhamnulokinase (EC 2.7.1.5) from Rhizobium leguminosarum bv. trifolii
PFams: FGGY_N
459 amino acids: PaperBLAST, CDD (Cluster 1)

Sinorhizobium meliloti

SMc03003 Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Sinorhizobium meliloti 1021
PFams: FGGY_N
462 amino acids: PaperBLAST, CDD (Cluster 1)