GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for rhaS (L-rhamnose ABC transporter, substrate-binding component RhaS) in L-rhamnose catabolism

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Definition of rhaS

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by cluster

Rhizobium leguminosarum

TC 3.A.1.2.9 / Q7BSH5 RhaS, component of Rhamnose porter (Richardson et al., 2004) (Transport activity is dependent on rhamnokinase (RhaK; AAQ92412) activity (Richardson and Oresnik, 2007) This could be an example of group translocation!) from Rhizobium leguminosarum (biovar trifolii)
PFams: Peripla_BP_1, Peripla_BP_4
Heteromeric, 331 amino acids: PaperBLAST, CDD (Singleton 1)