GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rhaT (L-rhamnose:H+ symporter RhaT) in L-rhamnose catabolism

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Definition of rhaT

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 339-344 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b3907 rhamnose/lyxose:H+ symporter from Escherichia coli K-12 substr. MG1655
RHAT_ECOLI / P27125 L-rhamnose-proton symporter; L-rhamnose-H(+) transport protein from Escherichia coli (strain K12)
TC 2.A.7.6.1 / P27125 Rhamnose:H+ symporter, RhaT from Escherichia coli
P27125 rhamnose/lyxose:H+ symporter from Escherichia coli (strain K12)
PFams: RhaT
344 amino acids: PaperBLAST, CDD, Compare to cluster

Q8A1A1 L-rhamnose/H+ symporter
339 amino acids: PaperBLAST, CDD, Compare to cluster