GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rbsB (D-ribose ABC transporter, substrate-binding component RbsB) in D-ribose catabolism

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Definition of rbsB

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Escherichia coli

b3751 ribose ABC transporter periplasmic binding protein from Escherichia coli K-12 substr. MG1655
RBSB_ECOLI / P02925 Ribose import binding protein RbsB from Escherichia coli (strain K12)
TC 3.A.1.2.1 / P02925 RbsB aka RBSP aka PRLB aka B3751, component of Ribose porter from Escherichia coli
P02925 ribose ABC transporter periplasmic binding protein from Escherichia coli (strain K12)
GB|AAC76774.1 D-ribose-binding periplasmic protein; EC 3.6.3.17 from Escherichia coli K12
PFams: Peripla_BP_1, Peripla_BP_4, Peripla_BP_6, Peripla_BP_3
Heteromeric, 296 amino acids: PaperBLAST, CDD (Cluster 1)

Organism unknown

A0A161ZH48 LacI family transcriptional regulator
318 amino acids: PaperBLAST, CDD (Cluster 1)

A0A1N7UEH6 LacI family transcriptional regulator; SubName: Full=Ribose transport system substrate-binding protein; SubName: Full=Sugar ABC transporter substrate-binding protein
318 amino acids: PaperBLAST, CDD (Cluster 1)

D8IUD0 ABC-type sugar transport system, periplasmic component protein
314 amino acids: PaperBLAST, CDD (Cluster 1)

Thermotoga maritima

TC 3.A.1.2.19 / Q9X053 Periplasmic binding protein/LacI transcriptional regulator, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: Peripla_BP_1, Peripla_BP_4, Peripla_BP_3
Heteromeric, 323 amino acids: PaperBLAST, CDD (Cluster 1)