GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rbsC (D-ribose ABC transporter, permease component RbsC) in D-ribose catabolism

Or see other characterized proteins similar to rbsC

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Or cluster curated proteins matching a keyword

Definition of rbsC

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 321-331 amino acids (2/5 heteromeric)

The first sequence in each cluster is the seed.

b3750 ribose ABC transporter membrane subunit from Escherichia coli K-12 substr. MG1655
P0AGI1 ribose ABC transporter membrane subunit from Escherichia coli (strain K12)
RBSC_ECOLI / P0AGI1 Ribose import permease protein RbsC from Escherichia coli (strain K12)
TC 3.A.1.2.1 / P0AGI1 Ribose transport system permease protein RbsC aka B3750, component of Ribose porter from Escherichia coli
PFams: BPD_transp_2
Heteromeric, 321 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.2.19 / Q9X050 ABC-type transporter, integral membrane subunit, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 331 amino acids: PaperBLAST, CDD, Compare to cluster

A0A166R405 ABC transporter permease
325 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1N7UNQ5 ABC transporter permease; SubName: Full=Monosaccharide ABC transporter membrane protein, CUT2 family
325 amino acids: PaperBLAST, CDD, Compare to cluster

D8IUD2 ABC-type sugar transport system, permease component protein
328 amino acids: PaperBLAST, CDD, Compare to cluster